Bioinformatics · Genomics · Diagnostics · Research Capability

Advancing Biological Research.
Building Bioinformatics Capability.

I am a molecular biologist and bioinformatician working across research, education and translational computing. I develop reproducible analytical approaches, practical research software and training that help researchers move confidently from sequence data to biological insight.

My work connects biological questions with computational methods and turns specialist bioinformatics into sustainable research capability.

Research

Bioinformatics for biological discovery and real-world use

My research spans genomics, microbiome analysis and diagnostic bioinformatics, with an emphasis on reproducible methods that can move between discovery research and applied settings.

Research theme 02

Microbiome & environmental genomics

Microbial community analysis and metagenomic approaches to understand diversity, function and biological responses in agricultural and environmental systems.

  • 16S & metagenomics
  • Soil microbiome
  • AMR & community ecology
Research theme 03

Reproducible computational biology

Scalable pipelines, containerised environments and practical analysis systems designed for transparent, repeatable and transferable research.

  • Nextflow & HPC
  • Python, R & Bash
  • Workflow reproducibility
Selected recent output2026

Effects of Soil Amelioration on Wheat Growth, Nutrition, and Soil Microbiome Dynamics in Sandy Soil

Journal of Soil Science and Plant Nutrition

View all research outputs

Academic contribution

Research, education and translation

I work across the three areas that increasingly need to reinforce one another in modern biological science: generating knowledge, building people, and translating computational methods into practice.

01

Research

Interdisciplinary bioinformatics research connecting sequencing, biological interpretation and reproducible computational analysis.

02

Education & capability

Research-integrated teaching that develops practical independence in HDR students, early-career researchers and scientific teams.

03

Translation & engagement

Interfaces, workflows and collaborations that help move bioinformatics from specialist analysis into routine research and diagnostic practice.

Research education

Building independent bioinformatics capability

Through BCRTI, I develop focused micro-credentials and practical learning environments for researchers who need to use bioinformatics in their own projects.

Bioinformatics Capability and Research Training Institute

Learn → Apply → Generate Results → Communicate

Training is organised around authentic research workflows, real data and reproducible practice. The goal is durable analytical capability that researchers can carry into their next project.

Explore BCRTI
01

Foundations of BioinformaticsSequencing data · Linux · computing environments · reproducibility

02

Microbiome Analysis16S · metagenomics · diversity · interpretation

03

Transcriptomics & RNA-seqRead processing · differential expression · pathways · reporting

04

Genome AnalysisAssembly · annotation · variants · comparative genomics

10+

Capability-focused Micro-credentialsPractical bioinformatics training for HDR students, researchers & research organisations

Research software

Simplifying access—not the bioinformatics.

I build interfaces and automated workflows that preserve analytical rigour while reducing avoidable technical barriers for researchers and diagnostic scientists.

Diagnostic workflow

sangerFlow

Sanger sequencing analysis for pest and pathogen identification.

Reference infrastructure

blastdbbuilder

Building and maintaining local BLAST databases for reproducible analysis.

Analysis interface

BLASTRunner

Structured local BLAST analysis with accessible execution and reporting.

Metagenomics

MECAR

An interface around metagenomic assembly and analytical reporting workflows.

Genomic surveillance

FluTrakka

Workflow support for influenza genomic surveillance and sequence analysis.

Long-read analysis

NanoLens

A developing interface for accessible Oxford Nanopore sequence analysis.

View software on GitHub ↗

Academic trajectory

Biology → computation → capability

My career has developed across molecular biology, international research, applied diagnostics and academic teaching. That path gives me a practical view of how computational biology can support both discovery and institutional capability.

Current

Adjunct Senior Lecturer

The University of Western Australia · School of Biological Sciences

2024—present

Adjunct Senior Lecturer

Murdoch University · School of Veterinary Medicine

2021—present

Laboratory Scientist · HTS & Bioinformatics

Department of Primary Industries and Regional Development, Western Australia

2019—2021

JSPS Postdoctoral Research Fellow

Japan International Research Center for Agricultural Sciences · Tsukuba, Japan

Collaboration

Where my expertise can add value

Research programs

Bioinformatics design, sequencing analysis, genomics, microbiome and reproducible computational workflows embedded within biological research.

Research capability

Structured programs for HDR cohorts, early-career researchers and research teams developing computational independence.

Diagnostic translation

Turning analytical workflows into practical, repeatable systems for laboratory, surveillance and diagnostic environments.

Connect

Research. Education. Collaboration.

I welcome conversations with universities, research institutes, diagnostic laboratories and collaborators working on biological questions that benefit from rigorous, accessible bioinformatics.